Chapter 6 Summary and Reproducibility

We have finished a nice book……..

Here is some information for for reproducibility:

sessionInfo()
## R version 3.5.2 (2018-12-20)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 7 x64 (build 7601) Service Pack 1
## 
## Matrix products: default
## 
## locale:
## [1] LC_COLLATE=English_United States.1252 
## [2] LC_CTYPE=English_United States.1252   
## [3] LC_MONETARY=English_United States.1252
## [4] LC_NUMERIC=C                          
## [5] LC_TIME=English_United States.1252    
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] OpenMx_2.12.2    sem_3.1-9        lavaan_0.6-3     ggraph_1.0.2    
##  [5] ggplot2_3.1.0    corrplot_0.84    tidyr_0.8.2      magrittr_1.5    
##  [9] dplyr_0.8.0.1    MVN_5.6          kableExtra_1.0.1 knitr_1.21      
## [13] psych_1.8.12     semPlot_1.1      car_3.0-2        carData_3.0-2   
## 
## loaded via a namespace (and not attached):
##   [1] readxl_1.3.0           backports_1.1.3        Hmisc_4.2-0           
##   [4] BDgraph_2.55           plyr_1.8.4             igraph_1.2.4          
##   [7] lazyeval_0.2.2         sp_1.3-1               splines_3.5.2         
##  [10] digest_0.6.18          htmltools_0.3.6        viridis_0.5.1         
##  [13] matrixcalc_1.0-3       checkmate_1.9.1        lisrelToR_0.1.4       
##  [16] cluster_2.0.7-1        openxlsx_4.1.0         readr_1.3.1           
##  [19] jpeg_0.1-8             colorspace_1.4-1       ggrepel_0.8.0         
##  [22] rvest_0.3.2            rrcov_1.4-7            haven_2.1.0           
##  [25] xfun_0.4               crayon_1.3.4           lme4_1.1-20           
##  [28] zoo_1.8-4              survival_2.43-3        glue_1.3.1            
##  [31] gtable_0.3.0           webshot_0.5.1          mi_1.0                
##  [34] kernlab_0.9-27         prabclus_2.2-7         DEoptimR_1.0-8        
##  [37] ggm_2.3                abind_1.4-5            VIM_4.8.0             
##  [40] scales_1.0.0           sgeostat_1.0-27        mvtnorm_1.0-8         
##  [43] GGally_1.4.0           sROC_0.1-2             Rcpp_1.0.1            
##  [46] viridisLite_0.3.0      xtable_1.8-3           laeken_0.5.0          
##  [49] htmlTable_1.13.1       units_0.6-2            foreign_0.8-71        
##  [52] mclust_5.4.2           Formula_1.2-3          stats4_3.5.2          
##  [55] truncnorm_1.0-8        vcd_1.4-4              htmlwidgets_1.3       
##  [58] httr_1.4.0             fpc_2.1-11.1           RColorBrewer_1.1-2    
##  [61] modeltools_0.2-22      acepack_1.4.1          farver_1.1.0          
##  [64] NADA_1.6-1             flexmix_2.3-15         pkgconfig_2.0.2       
##  [67] reshape_0.8.8          XML_3.98-1.17          nnet_7.3-12           
##  [70] kutils_1.60            tidyselect_0.2.5       rlang_0.3.1           
##  [73] reshape2_1.4.3         munsell_0.5.0          cellranger_1.1.0      
##  [76] tools_3.5.2            moments_0.14           ranger_0.11.1         
##  [79] pls_2.7-0              cvTools_0.3.2          fdrtool_1.2.15        
##  [82] evaluate_0.13          stringr_1.4.0          arm_1.10-1            
##  [85] yaml_2.2.0             zip_1.0.0              robustbase_0.93-3     
##  [88] purrr_0.3.2            glasso_1.10            pbapply_1.4-0         
##  [91] nlme_3.1-137           whisker_0.3-2          xml2_1.2.0            
##  [94] compiler_3.5.2         rstudioapi_0.9.0       curl_3.3              
##  [97] png_0.1-7              e1071_1.7-0.1          zCompositions_1.2.0   
## [100] huge_1.2.7             tweenr_1.0.1           tibble_2.0.1          
## [103] robCompositions_2.0.10 pbivnorm_0.6.0         pcaPP_1.9-73          
## [106] stringi_1.3.1          highr_0.7              qgraph_1.6.1          
## [109] rockchalk_1.8.140      forcats_0.4.0          trimcluster_0.1-2.1   
## [112] lattice_0.20-38        Matrix_1.2-15          nloptr_1.2.1          
## [115] pillar_1.3.1           lmtest_0.9-36          data.table_1.12.0     
## [118] corpcor_1.6.9          R6_2.4.0               latticeExtra_0.6-28   
## [121] bookdown_0.9           gridExtra_2.3          rio_0.5.16            
## [124] boot_1.3-20            energy_1.7-5           MASS_7.3-51.1         
## [127] gtools_3.8.1           assertthat_0.2.1       rjson_0.2.20          
## [130] withr_2.1.2            nortest_1.0-4          mnormt_1.5-5          
## [133] diptest_0.75-7         parallel_3.5.2         hms_0.4.2             
## [136] grid_3.5.2             rpart_4.1-13           coda_0.19-2           
## [139] class_7.3-15           minqa_1.2.4            rmarkdown_1.11        
## [142] mvoutlier_2.0.9        d3Network_0.5.2.1      ggforce_0.1.3         
## [145] numDeriv_2016.8-1      semTools_0.5-1         base64enc_0.1-3